Tag Archive Regulatory regions

The Tunicate Web Portal, a collaborative tool for the Tunicate Community

DBTGR

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General information

Homepage

http://dbtgr.hgc.jp

 

Description

DBTGR provides information on tunicate gene regulation, including the location of expression, the identified regulatory elements present in the promoter sequence and the transcription factors involved.

 

Developed in Japan

Created in 2005

How to cite this resource :

Contact information

Nicolas Sierro, nsierro@hgc.jp

 

Standards used

Publications

Social networks

ANISEED

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General information

Homepage

https://www.aniseed.fr/

 

Description 

Aniseed database provides high throughput data and in situ experiment data from literature for ascidian species.

 

Developed in France

Created in 2007

How to cite this resource 

The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program. Tassy et al. Genome Res 2010.

Contact information

Delphine Dauga, contact@bioself-communication.com

 

Standards used

  • Article Minimum Information Standard
  • Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments
  • Evidence codes
  • Gene Ontology
  • Ascidian developmental and anatomical ontologies

Publications

  • ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Brozovic et al. Nucleic Acids Res. 2018 
  • ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. Brozovic et al. Nucleic Acids Res 2015. 
  • Biocuration: a new challenge for the tunicate community. Dauga. 2015 
  • Guidelines for the nomenclature of genetic elements in tunicate genomes. Stolfi et al. 2015
  • Ontology for the asexual development and anatomy of the colonial chordate Botryllus schlosseri. Manni et al. PLoS One. 2014
  • The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program. Tassy et al. Genome Res 2010. 
  • Creating 3D digital replicas of ascidian embryos from stacks of confocal images. Robin et al. Cold Spring Harb Protoc. 2011. 
  • Imaging of fixed ciona embryos for creating 3D digital replicas. Robin et al. Cold Spring Harb Protoc. 2011
  • Time-lapse imaging of live Phallusia embryos for creating 3D digital replicas. Robin et al. Cold Spring Harb Protoc. 2011 
  • Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). Deutsch et al. Nat Biotechnol. 2008 

 

Social networks