Tag Archive Anatomy

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FABA2

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General information

Homepage 

https://www.bpni.bio.keio.ac.jp/chordate/faba2/top.html

 

Description

In this study, to clear spatio-temporal morphological change of cells after hatching and construct the comprehensive developmental table, “FABA2″, we applied above mentioned approach to Ciona intestinalis in late developmental stages, from 17.5hpf hatching larva to 7dpf juvenile.

 

Developed in Japan

Created in 2010

How to cite this resource :

Contact information

Kohji Hotta, khotta@keio.jp

 

Standards used

Publications

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FABA

Comments Off on FABA Databases, Resources

General information

Homepage 

https://www.bpni.bio.keio.ac.jp/chordate/faba/1.4/top.html

 

Description

FABA (Four-dimensional Ascidian Body Atlas) includes ascidian’s three-dimensional (3D) and cross-sectional images through the developmental time course.

 

Developed in Japan

Created in 2010

How to cite this resource :

Contact information

Kohji Hotta, khotta@keio.jp

 

Standards used

Publications

Social networks

ANISEED

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General information

Homepage

https://www.aniseed.fr/

 

Description 

Aniseed database provides high throughput data and in situ experiment data from literature for ascidian species.

 

Developed in France

Created in 2007

How to cite this resource 

The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program. Tassy et al. Genome Res 2010.

Contact information

Delphine Dauga, contact@bioself-communication.com

 

Standards used

  • Article Minimum Information Standard
  • Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments
  • Evidence codes
  • Gene Ontology
  • Ascidian developmental and anatomical ontologies

Publications

  • ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Brozovic et al. Nucleic Acids Res. 2018 
  • ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. Brozovic et al. Nucleic Acids Res 2015. 
  • Biocuration: a new challenge for the tunicate community. Dauga. 2015 
  • Guidelines for the nomenclature of genetic elements in tunicate genomes. Stolfi et al. 2015
  • Ontology for the asexual development and anatomy of the colonial chordate Botryllus schlosseri. Manni et al. PLoS One. 2014
  • The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program. Tassy et al. Genome Res 2010. 
  • Creating 3D digital replicas of ascidian embryos from stacks of confocal images. Robin et al. Cold Spring Harb Protoc. 2011. 
  • Imaging of fixed ciona embryos for creating 3D digital replicas. Robin et al. Cold Spring Harb Protoc. 2011
  • Time-lapse imaging of live Phallusia embryos for creating 3D digital replicas. Robin et al. Cold Spring Harb Protoc. 2011 
  • Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). Deutsch et al. Nat Biotechnol. 2008 

 

Social networks