General information
Homepage
Description
Aniseed database provides high throughput data and in situ experiment data from literature for ascidian species.
Developed in France
Created in 2007
How to cite this resource
The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program. Tassy et al. Genome Res 2010.
Contact information
Delphine Dauga, contact@bioself-communication.com
Tools
Standards used
- Article Minimum Information Standard
- Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments
- Evidence codes
- Gene Ontology
- Ascidian developmental and anatomical ontologies
Publications
- ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Brozovic et al. Nucleic Acids Res. 2018
- ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. Brozovic et al. Nucleic Acids Res 2015.
- Biocuration: a new challenge for the tunicate community. Dauga. 2015
- Guidelines for the nomenclature of genetic elements in tunicate genomes. Stolfi et al. 2015
- Ontology for the asexual development and anatomy of the colonial chordate Botryllus schlosseri. Manni et al. PLoS One. 2014
- The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program. Tassy et al. Genome Res 2010.
- Creating 3D digital replicas of ascidian embryos from stacks of confocal images. Robin et al. Cold Spring Harb Protoc. 2011.
- Imaging of fixed ciona embryos for creating 3D digital replicas. Robin et al. Cold Spring Harb Protoc. 2011
- Time-lapse imaging of live Phallusia embryos for creating 3D digital replicas. Robin et al. Cold Spring Harb Protoc. 2011
- Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). Deutsch et al. Nat Biotechnol. 2008